About Help Definitions Submit Search Analyse Browse Home


Switch #:
SWTI000569
Switch type:
Binary
Switch subtype:
Pre-translational

Description:
Alternative splicing removes the mitochondrial localisation signal (MLS) motif of Isoform Mitochondrial of Lysine--tRNA ligase (KARS), abrogating binding to Mitochondrial import receptor subunit TOM70 (TOMM70A) and import into mitochondria. Unusually, the first two exons of Lysine--tRNA ligase (KARS) are non-constitutive. The first exon does not contain a localisation signal (resulting in cytosol localisation) whereas the second exon contains an MLS.

Participants:
(1) Isoform Mitochondrial of Lysine--tRNA ligase (KARS)
(2) Mitochondrial import receptor subunit TOM70 (TOMM70A)

Interactions
Interaction #1 KARS - TOMM70A

Interfaces
(1) ELM:TRG_MLS motif (1MLTQAAVRLVRGSLRKTSWAEWGHRELRLGQLAPFTAPHKDKSFSDQRS49) in Isoform Mitochondrial of Lysine--tRNA ligase (KARS)
(2) Tetratricopeptide repeat (114-578) in Mitochondrial import receptor subunit TOM70 (TOMM70A)

Interaction Regulation
Alternative splicing Abrogation of the Isoform Mitochondrial of Lysine--tRNA ligase (KARS) TRG_MLS motif - Mitochondrial import receptor subunit TOM70 (TOMM70A) Tetratricopeptide repeat interaction

References

(1) The human lysyl-tRNA synthetase gene encodes both the cytoplasmic and mitochondrial enzymes by means of an unusual alternative splicing of the primary transcript.
Tolkunova et al. J. Biol. Chem. (2000)

See also

Other switches involving participants
Mitochondrial import receptor subunit TOM70 (TOMM70A) - 7 more (view)

Other switches involving interfaces
ELM:TRG_MLS - 7 more (view)
Tetratricopeptide repeat - 8 more (view)




Loading visualisation

           
Please send any suggestions/comments to: switches@elm.eu.org